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Open Access Highly Accessed Research article

An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies

Michiel E Adriaens12*, Magali Jaillard1, Lars MT Eijssen1, Claus-Dieter Mayer3 and Chris TA Evelo12

Author Affiliations

1 Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands

2 Netherlands Consortium for Systems Biology (NCSB), University of Amsterdam, The Netherlands

3 Department of Biomathematics and Statistics Scotland, University of Aberdeen, Rowett Institute of Nutrition and Health, Aberdeen, UK

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BMC Genomics 2012, 13:42  doi:10.1186/1471-2164-13-42

Published: 25 January 2012

Additional files

Additional file 1:

ArrayQualityMetrics quality control and bias assessment results (part 1). A ZIP file containing a folder with the results of the quality control and bias assessment generated with the arrayQualityMetrics package for datasets #1 and #2. The results are formatted as webpages. Individual results can be accessed by opening the 'index.html' file in any subfolder. An overview of all results can be accessed by combining the contents of the main folder in additional file 1 with the contents of the main folder of additional file 2, and subsequently opening the 'index.html' file in the main folder.

Format: ZIP Size: 7MB Download file or display content in a new window

Open Data

Additional file 2:

ArrayQualityMetrics quality control and bias assessment results (part 2). A ZIP file containing a folder with the results of the quality control and bias assessment generated with the arrayQualityMetrics package for datasets #3, #4 and #5. The results are formatted as webpages. Individual results can be accessed by opening the 'index.html' file in any subfolder. An overview of all results can be accessed by combining the contents of the main folder in additional file 1 with the contents of the main folder of additional file 2, and subsequently opening the 'index.html' file in the main folder.

Format: ZIP Size: 18MB Download file or display content in a new window

Open Data