Table 2 |
||||
|
Precursors of conserved and novel miRNAs from globe artichoke |
||||
|
miRNA |
Sequence |
pre-miRNA length |
MFEI |
Accession |
|
|
||||
|
cca-miR156a |
UGACAGAAGAGAGUGAGCAC |
102 |
1.29 |
JN381965 |
|
|
||||
|
cca-miR156a* |
GCUCACUGCUCUAUCUGUCACC |
|||
|
|
||||
|
cca-miR156b |
UGACAGAAGAGAGUGAGCACA |
118 |
0.88 |
GE609552 |
|
|
||||
|
cca-miR157a |
UUGACAGAAGAUAGAGAGCAC |
98 |
1.20 |
JN381966 |
|
|
||||
|
cca-miR160-1 |
UGCCUGGCUCCCUGUAUGCCA |
96 |
1.13 |
JN381967 |
|
|
||||
|
cca-miR160-2 |
UGCCUGGCUCCCUGUAUGCCA |
93 |
1.00 |
JN381968 |
|
|
||||
|
cca-miR164a |
UGGAGAAGCAGGGUACGUGCA |
83 |
0.99 |
JN381969 |
|
|
||||
|
cca-miR166d |
GGAAUGUUGUCUGGCUCGAGG |
86 |
1.12 |
JN381970 |
|
|
||||
|
cca-miR166d* |
UCGGACCAGGCUUCAUUCCUU |
|||
|
|
||||
|
cca-miR167a |
UGAAGCUGCCAGCAUGAUCUGG |
218 |
0.77 |
GE597437 |
|
|
||||
|
cca-miR168a |
UCGCUUGGUGCAGGUCGGGAA |
118 |
0.83 |
JN381971 |
|
|
||||
|
cca-miR169a-1 |
CAGCCAAGGAUGACUUGCCGG |
102 |
0.94 |
JN381972 |
|
|
||||
|
cca-miR169a-2 |
CAGCCAAGGAUGACUUGCCGG |
99 |
0.91 |
JN381973 |
|
|
||||
|
cca-miR171a |
UGAUUGAGCCGUGCCAAUAUC |
92 |
0.82 |
JN381974 |
|
|
||||
|
cca-miR172a |
AGAAUCUUGAUGAUGCUGCAU |
79 |
1.04 |
JN381975 |
|
|
||||
|
cca-miR319c |
UUGGACUGAAGGGAGCUCCCU |
198 |
1.11 |
JN381976 |
|
|
||||
|
cca-miR390 |
AAGCUCAGGAGGGAUAGCGCC |
88 |
1.39 |
JN381977 |
|
|
||||
|
cca-miR393a |
UCCAAAGGGAUCGCAUUGAUCC |
142 |
0.97 |
JN381978 |
|
|
||||
|
cca-miR394 |
UUGGCAUUCUGUCCACCUCC |
211 |
0.81 |
GE603351 |
|
|
||||
|
cca-miR395a |
CUGAAGUGUUUGGGGGAACUC |
80 |
0.97 |
JN381980 |
|
|
||||
|
cca-miR395b-1 |
CUGAAGUGUUUGGAGGAACUC |
92 |
1.17 |
JQ029164 |
|
|
||||
|
cca-miR395b-2 |
CUGAAGUGUUUGGAGGAACUC |
92 |
1.04 |
JQ029165 |
|
|
||||
|
cca-miR396a |
UUCCACAGCUUUCUUGAACUU |
119 |
1.38 |
JN381981 |
|
|
||||
|
cca-miR396a* |
GUUCAAUAAAGCUGUGGGAAA |
|||
|
|
||||
|
cca-miR396b |
UUCCACAGCUUUCUUGAACUG |
110 |
1.04 |
JN381982 |
|
|
||||
|
cca-miR398a |
UGUGUUCUCAGGUCGCCCCUG |
100 |
1.15 |
GE610628 |
|
|
||||
|
cca-miR408a |
UGCACUGCCUCUUCCCUGGCU |
107 |
0.70 |
GE605886 |
|
|
||||
|
cca-miR399a |
UGCCAAAGGAGAUUUGCCCUG |
83 |
1.12 |
JN381983 |
|
|
||||
|
cca-novel-1-5p |
UGUCUAAGACAACUCCUUGGA |
117 |
1.17 |
JN381984 |
|
|
||||
|
cca-novel-1-3p |
CAAGAAGUUGUCUUAGGCAUG |
|||
|
|
||||
|
cca-novel-2 |
AUACGACAAAUAGAACAAAUAAAC |
71 |
0.80 |
JN381985 |
|
|
||||
|
cca-novel-3 |
ACGAAAACAUGUUGGUCUCACGUG |
217 |
0.78 |
JN381986 |
|
|
||||
|
cca-novel-4-5p |
UUGCAAGUAUCCGGAUUUAAA |
210 |
0.78 |
JN381987 |
|
|
||||
|
cca-novel-4-3p |
UUAAAUCCGGAUACUUGCAAC |
|||
|
|
||||
|
cca-novel-5 |
AAAGGGGACAAUAUCUGGUACGGU |
110 |
1.38 |
JN381988 |
|
|
||||
|
cca-novel-6 |
CACGAAAACAGACUGGUCUCACA |
222 |
0.94 |
JN381989 |
|
|
||||
|
cca-novel-7-1 |
UGAGAAGCGUAAGAAGGGAUC |
157 |
0.88 |
JN381990 |
|
|
||||
|
cca-novel-7-2 |
UGAGAAGCGUAAGAAGGGAUC |
98 |
0.92 |
JN381991 |
|
|
||||
|
cca-novel-7-3 |
UGAGAAGCGUAAGAAGGGAUC |
171 |
0.72 |
JN381992 |
|
|
||||
|
cca-novel-8 |
AUGGACGUGUUAUUCAUCAUGAAU |
122 |
1.15 |
JN381993 |
|
|
||||
|
cca-novel-9-5p |
AUCUUGUAACAUUUGAUGAUGUGG |
122 |
1.19 |
JN381994 |
|
|
||||
|
cca-novel-9-3p |
AUCCACGUCAUCAAAUGUUACAAG |
|||
|
|
||||
|
cca-novel-10-5p |
UCUUUAUGUCACGAUGUAUGAC |
255 |
0.86 |
JN381995 |
|
|
||||
|
cca-novel-10-3p |
CAUGCAUGGUGAUAUAAAUAGC |
|||
|
|
||||
|
cca-novel-11 |
GAAGUUUCAAGUGUAAAAAAGUGG |
116 |
1.58 |
JN381996 |
|
|
||||
|
cca-novel-12 |
UCUGAAACUCAAGAACACGUUG |
81 |
1.06 |
JN381997 |
|
|
||||
|
cca-novel-13-5p |
UGAAAGGAAUCAUGAACGUGA |
115 |
0.83 |
JN381998 |
|
|
||||
|
cca-novel-13-3p |
UCACGUCCAUUGUCCCUUUCA |
|||
|
|
||||
|
cca-novel-14 |
AAGCGUAAGAAGAGAUCUGAACC |
157 |
0.80 |
JN381999 |
|
|
||||
|
cca-novel-15 |
AUAAGGAGAGUUAAGCUGAGAAGC |
184 |
0.72 |
JN382000 |
|
|
||||
|
cca-novel-16-5p |
GUAAGAAGAGAUCUCCACCCUUGG |
162 |
0.84 |
JN382001 |
|
|
||||
|
cca-novel-16-3p |
AUCAAGGGUUCAGAUCUCUUCUU |
|||
|
|
||||
|
cca-novel-17 |
UAUGGUGAGAAGGGUAAGAAG |
169 |
0.90 |
JN382002 |
|
|
||||
|
cca-novel-18 |
UCUGGACGGUAUGCACAUGUGCAU |
140 |
1.23 |
JN382003 |
|
|
||||
|
cca-novel-19 |
UUCAAGAAAGCUGUGGGAAAA |
124 |
1.34 |
JN382004 |
|
|
||||
|
cca-novel-20-5p |
CAUGCUUGUGAUCAAAUGAUG |
179 |
0.84 |
JN382005 |
|
|
||||
|
cca-novel-20-3p |
UCAUUUGAUCACAAGCAUGAG |
|||
|
|
||||
|
cca-novel-21 |
GGUUAGGUUGAUCGGGUUGAAGAC |
98 |
0.88 |
GE597304 |
|
|
||||
|
cca-novel-22-5p |
UGGAAUUGGGUGCUUCGGAAGA |
116 |
0.84 |
GE599895 |
|
|
||||
|
cca-novel-22-3p |
UUCCGAGGCCACCCAUUCCAAC |
|||
|
|
||||
|
MFEI: minimal folding free energy index |
||||
|
De Paola et al. BMC Genomics 2012 13:41 doi:10.1186/1471-2164-13-41 |
||||
