Table 3

Representative genes significantly up- and down-regulated in roots of cowpea cultivar B301 13 days post-inoculation with S. gesnerioides race SG3
Categories Sequence ID Annotation Fold change P value
Transcription factors 33693912 POZ/BTB containing-protein AtPOB1 6.04 0.000
33646298 chlorophyll a/b-binding protein CP24 precursor 5.2 0.012
33693491* asymmetric leaves 1 (AS1), phantastica 4.57 0.000
33683206 growth regulating factor 4 (GRF4) 4.53 0.006
33654115 ethylene responsive element 3 (ERF3) 4.08 0.010
33681428* RING-H2 finger protein 2.91 0.006
Energy 33666738 ALMT1 (Aluminum activate malate transporter) 19.62 0.001
33676680 folate transporter 1 (FOLT1) 4.23 0.005
33679899 ABC transporter-like protein 2.85 0.047
Cellular transduction 33675942* Ser/Thr protein kinase 10.98 0.015
33668608 Leucine-rich repeat protein kinase family 6.62 0.002
33684252 FU (FUSED); protein serine/threonine kinase 3.97 0.023
33647807 serine/arginine rich protein 3.18 0.027
33671868 receptor-like protein kinase 2 3.04 0.001
Defense 33646015 chitinase 1 precursor, narbonin 6.06 0.000
33663380 beta-galactosidase 4.21 0.003
33667640 disease resistance protein RPM1 2.15 0.044
Development 33668608 leaf senescence-associated receptor kinase 6.62 0.001
33653025 auxin-regulated protein 3.67 0.008
33645492 ripening related protein (MLP43) 3.05 0.014
Cellular component 33686210 pectin methylesterase 3.29 0.002
33650922 4-coumarate – CoA-lipase 3.23 0.030
Unknown protein 33675717 unnamed protein product 4.27 0.050
33658803 hypothetical protein 3.71 0.015
Unknown protein 33669403 predicted protein -12.21 0.001
33684891 hypothetical protein -10.8 0.000
33691084 predicted protein -8.36 0.000
33660796 predicted protein -7.24 0.001
Cellular transport 33672142 nodulin MtN21 family protein -11.55 0.000
33657530 early nodulin 55-2 precursor -7.55 0.006
33689578 oligopeptide transporter OPT family -7.24 0.004

*genes verified by qRT PCR.

Huang et al.

Huang et al. BMC Genomics 2012 13:402   doi:10.1186/1471-2164-13-402

Open Data