Table 1 |
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| z-scores (first five columns) and numbers of instances (last five columns) of the most enriched transposable elements and classes of TEs for the five possible combinations of the two datasets: CM, E2T, CM only (= CM\ E2T), E2T only (= E2T\ CM) and the intersection of the two datasets | ||||||||||
| CM | CM only | E2T | E2T only | int | CM | CM only | E2T | E2T only | int | |
| ALR/Alpha | 3.39 | 4.56 | -2.32 | -2 | -1.63 | 19 | 19 | 0 | 0 | 0 |
| HAL1-2a_MD | -1.73 | -0.9 | 2.06 | 4.61 | -1.84 | 1 | 1 | 10 | 10 | 0 |
| L1PBa | 2.46 | 5.42 | -2.33 | -2.12 | -1.24 | 15 | 13 | 2 | 0 | 2 |
| L2b | 4.54 | 5.01 | 3.18 | 2.76 | 1.02 | 284 | 149 | 292 | 157 | 135 |
| LSU-rRNA_Hsa | 26.31 | 11.67 | 31.65 | 16.3 | 21.52 | 17 | 5 | 21 | 9 | 12 |
| LTR16A | 4.31 | 1.17 | 4.1 | 1.51 | 4.39 | 30 | 9 | 32 | 11 | 21 |
| LTR19A | 24.31 | 17.77 | 17.83 | 8.8 | 17.7 | 22 | 10 | 17 | 5 | 12 |
| LTR3 | 26.63 | 9.93 | 27.34 | 9.12 | 25.12 | 12 | 3 | 12 | 3 | 9 |
| LTR33 | 5.14 | 3.2 | 2.04 | -0.53 | 3.79 | 42 | 18 | 31 | 7 | 24 |
| LTR3A | 38.69 | 29.61 | 21.24 | 4.95 | 21.92 | 25 | 14 | 14 | 3 | 11 |
| LTR40a | 8.77 | 8.45 | 6.38 | 4.28 | 6.19 | 20 | 10 | 17 | 7 | 10 |
| LTR47A | 6.12 | -0.1 | 10.88 | 6.51 | 8.63 | 10 | 2 | 17 | 9 | 8 |
| LTR8 | 12.3 | 15.3 | 2.68 | 1.24 | 3.02 | 52 | 38 | 22 | 8 | 14 |
| MER11A | 1.87 | 6.17 | -1.71 | -0.89 | -1.8 | 8 | 8 | 1 | 1 | 0 |
| MER20 | 2.84 | 0.51 | 3.6 | 2.71 | 2.91 | 52 | 20 | 59 | 27 | 32 |
| MER21A | 3.21 | 4.28 | 0.95 | 1.78 | 0.5 | 13 | 9 | 9 | 5 | 4 |
| MER31A | 9.47 | 5.65 | 6.36 | 0.97 | 9.56 | 20 | 7 | 16 | 3 | 13 |
| MER39 | 4.67 | 1.74 | 9.96 | 8.59 | 5.65 | 18 | 4 | 33 | 19 | 14 |
| MER39B | 5.28 | 0.93 | 7.14 | 4.31 | 6.69 | 11 | 2 | 15 | 6 | 9 |
| MER41A | 14.46 | 6.04 | 14.16 | 5.75 | 15.04 | 52 | 15 | 52 | 15 | 37 |
| MER41B | 18.63 | 8.54 | 14.97 | 5.84 | 16.22 | 63 | 23 | 56 | 16 | 40 |
| MER49 | 10.95 | 1.98 | 11.85 | 2.15 | 15.15 | 26 | 3 | 29 | 6 | 23 |
| MER4A | 4.12 | 2.47 | 6.85 | 7.26 | 3.65 | 10 | 4 | 15 | 9 | 6 |
| MER4A1 | 3.9 | 0.32 | 5.87 | 5.09 | 3.96 | 15 | 5 | 21 | 11 | 10 |
| MER4B | -0.89 | -1.52 | 3.75 | 5.06 | 0.12 | 6 | 1 | 21 | 16 | 5 |
| MER4D | 7.58 | 1.72 | 8.2 | 1.84 | 9.92 | 19 | 3 | 22 | 6 | 16 |
| MER50 | 4.9 | 5.86 | 2.42 | 2.29 | 1.73 | 21 | 13 | 16 | 8 | 8 |
| MER52A | 3.07 | 5.93 | -0.35 | 0.09 | -0.61 | 16 | 13 | 7 | 4 | 3 |
| MER77 | 6.43 | 5.66 | 3.74 | 1.84 | 3.7 | 22 | 12 | 17 | 7 | 10 |
| MER81 | -0.59 | -1.26 | 5.19 | 5.96 | 0.81 | 5 | 0 | 21 | 16 | 5 |
| MER87 | 17.46 | 9.3 | 16.67 | 7.78 | 13.82 | 15 | 6 | 14 | 5 | 9 |
| MER91A | 3.99 | 4.67 | 2.59 | 1.18 | 2.24 | 17 | 9 | 15 | 7 | 8 |
| MIR3 | 4.01 | -0.03 | 5.81 | 3.11 | 5.23 | 172 | 55 | 214 | 97 | 117 |
| MIRb | 2.76 | 1.19 | 6.57 | 5.45 | 3.43 | 488 | 190 | 625 | 327 | 298 |
| MIRc | 3.05 | 2.04 | 5.89 | 5.56 | 2.66 | 233 | 95 | 304 | 166 | 138 |
| MLT2B1 | 2.31 | 3.06 | 0.84 | -0.23 | 0.98 | 15 | 8 | 12 | 5 | 7 |
| MLT2B4 | 4.02 | 1.67 | 4.87 | 2.45 | 3.99 | 21 | 7 | 25 | 11 | 14 |
| MamRep605 | 1.97 | 0.59 | 3.73 | 2.61 | 2.24 | 13 | 4 | 19 | 10 | 9 |
| Plat_L3 | 2.64 | 3.61 | 1.34 | 1.29 | 0.62 | 13 | 8 | 11 | 6 | 5 |
| LTR/ERV1 | 12.77 | 5.84 | 10.86 | 4.04 | 11.55 | 592 | 227 | 604 | 239 | 365 |
| LTR/ERVK | 7.7 | 7.32 | 1.52 | -0.95 | 3.15 | 77 | 45 | 47 | 15 | 32 |
| LTR/ERVL | 8.98 | 5.6 | 5.65 | 1.37 | 6.83 | 415 | 177 | 395 | 157 | 238 |
| LTR/Gypsy? | 3.01 | 2.49 | 2.55 | 0.5 | 2.76 | 24 | 9 | 24 | 9 | 15 |
| SINE/MIR | 2.56 | 0.97 | 8.02 | 7.33 | 3.02 | 1170 | 480 | 1486 | 796 | 690 |
| Satellite/centr | 3.51 | 5.22 | -2.71 | -2.19 | -1.89 | 23 | 23 | 0 | 0 | 0 |
| rRNA | 14.31 | 9.74 | 19.99 | 17.64 | 12.42 | 23 | 9 | 33 | 19 | 14 |
In the first part of the table are reported TEs which are enriched (i.e. have a z-score greater than 3) in at least one of the two datasets used for the analysis. In the first five columns we report the z-score for the five possible combinations of the two datasets: CM, E2T, CM only = CM\ E2T, E2T only = E2T\ CM and the intersection of the two datasets. In the last five columns the absolute number of instances of each enriched TE in each one of the five combinations of the datasets. In the second part of the table we report the same information for the classes of TEs enriched in both the datasets used for the analysis.
Testori et al. BMC Genomics 2012 13:400 doi:10.1186/1471-2164-13-400
