Table 1

Summary of small RNA library sequencing

Library


B. pahangi L3

B. pahangi adult

H. contortus L3

H. contortus adult


Raw reads

13242069

13164896

5198711

12226463

Unique mapped sequences

268717

424849

244003

748568

Total mapped reads

3853899

8196608

3644275

5666474

Percentage mapped

29.1%

62.3%

70.1%

46.3%

tRNA

164815

314999

44469

161537

rRNA

463942

567695

1774431

1826279

Repeata

22

305

-

-

miRNA (mature)

2359229

5729861

1193015

1412260

miRNA (star)

16560

115880

2862

8811

cds/exon (sense)

263828

294245

227319

266308

cds/exon (antisense)

140829

391339

283917

271624

piRNAb

(44)

(49)

(15)

1296

Other

444630

782235

118247

1718359


a Not analysed for H. contortus.

b Only the H. contortus adult sequences are likely to represent genuine piRNAs.

Winter et al. BMC Genomics 2012 13:4   doi:10.1186/1471-2164-13-4

Open Data