Table 4 |
||
| Number of SNPs detected | ||
| Variants | Reference total1 | Segregating Total2 |
| Nonsynonymous | 23,795 | 20,463 |
| Synonymous | 52,506 | 47,281 |
| Stopgain | 377 | 295 |
| Stoplost | 8 | 7 |
| Exonic splice site | 1,437 | 1,256 |
| Exonic | 75,254 | 66,795 |
| Splice acceptor or donor site (interonic) | 734 | 607 |
| 5'UTR/3'UTR | 8,933 | 7,661 |
| Upstream/downstream | 142,829 | 124,005 |
| Intronic | 1,749,427 | 1,518,783 |
| Intergenic | 3,514,102 | 3,044,243 |
| ncRNA | 1,044 | 916 |
| Total | 5,493,760 | 4,764,266 |
1 SNPs detected compared to the reference genome in which the non-reference allele is detected in at least one of the 29 individuals. 2 Detected segregating SNPs within all turkey individuals.
Aslam et al. BMC Genomics 2012 13:391 doi:10.1186/1471-2164-13-391
