Figure 4.

Vision servlet forms and result of single and batch mode. Different input options are available. After selecting the sRNA of interest, replicons can be selected for visualization. Options for further analyses based on BLAST, as well as properties relating to the image output can be set. A An example relating to the LhrC transcript is displayed. B Single mode: the resulting image shows a comparative representation of a single sRNA candidate and flanking genes in selected organisms. Moving the mouse pointer over these, the corresponding properties of each object is shown in a separate popup window. C Batch mode: sRNAs displayed in Figure‚ÄČ1 are used as input in this example. The output-matrix indicates occurrence of the sRNA candidates in selected organisms and their directional relationships with respect to their surrounding genes.

Pischimarov et al. BMC Genomics 2012 13:384   doi:10.1186/1471-2164-13-384
Download authors' original image