Table 1

Animal small RNA datasets where significant amount of plant miRNAs were detected
SRA Run ID Organism Source* miRNAs (animal + plant) Plant miRNAs Most abundant plant miRNA family
Reads % of animal miRNAs Family Reads % of plant miRNAs % of animal miRNAs Rank in animal miRNA families
SRR039190 human blood 1175650 5342 0.456 miR168 2856 53.5 0.244 42
SRR036085 pea aphid whole insect 692109 1841 0.267 miR168 1695 92.1 0.246 18
SRR080701 pig abdominal fat 2572468 6709 0.261 miR535 2835 42.3 0.110 36
SRR042444 mouse bone marrow 3620895 8412 0.233 miR168 8411 100.0 0.233 15
SRR042463 mouse spleen 2092533 4500 0.216 miR168 4499 100.0 0.215 24
SRR042454 mouse lymph nodes 2019824 4274 0.212 miR168 4274 100.0 0.212 14
SRR042443 mouse bone marrow 3759698 7738 0.206 miR168 7732 99.9 0.206 18
SRR039191 human blood 2195526 4153 0.190 miR168 3627 87.3 0.166 28
SRR042448 mouse spleen 2845389 4549 0.160 miR168 4548 100.0 0.160 16
SRR042481 mouse pancreas 2358808 3693 0.157 miR168 3693 100.0 0.157 23
SRR042445 mouse spleen 3165427 4952 0.157 miR168 4951 100.0 0.157 15
SRR042451 mouse spleen 2238211 3397 0.152 miR168 3397 100.0 0.152 22
SRR042467 mouse spleen 3308658 4264 0.129 miR168 4262 100.0 0.129 23
SRR042456 mouse bone marrow 2645549 3344 0.127 miR168 3344 100.0 0.127 32
SRR042446 mouse spleen 2367601 2016 0.085 miR168 2015 100.0 0.085 24
SRR035544 silkworm whole body 1111992 705 0.063 miR168 508 72.1 0.046 28
SRR042462 mouse bone marrow 2133939 1279 0.060 miR168 1276 99.8 0.060 37
SRR042475 mouse embryonic fibroblasts 2438884 1420 0.058 miR168 1420 100.0 0.058 51
SRR042457 mouse bone marrow 3370053 1777 0.053 miR168 1777 100.0 0.053 31

*Please visit http://www.ncbi.nlm.nih.gov/sra/ webcite for detailed descriptions of source tissues and cell types.

Zhang et al.

Zhang et al. BMC Genomics 2012 13:381   doi:10.1186/1471-2164-13-381

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