Analysis of plant-derived miRNAs in animal small RNA datasets
1 Chesterfield Village Research Center, Monsanto Company, 700 Chesterfield Parkway, North Chesterfield, MO, 63017, USA
2 St. Louis – World Headquarters, Monsanto Company, 800 North Lindbergh Blvd, St. Louis, MO, 63167, USA
BMC Genomics 2012, 13:381 doi:10.1186/1471-2164-13-381Published: 8 August 2012
Additional file 1:
Table S1.Public sRNA datasets: organism and sample source distribution.
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Additional file 2:
Table S2.Public sRNA datasets and presence of plant miRNAs.
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Additional file 3:
Table S3.Abundant miRNAs in rice, soy and corn seeds.
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Additional file 4:
Table S4.Reads from human datasets map to non-human animal miRNAs.
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Additional file 5:
Table S5.Reads from insect libraries map to lettuce-specific sequence.
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Additional file 6:
Figure S1.Comparison of plant miRNA abundance between insect and diet source plant tissues sRNA datasets (A, B and C), and between plant miRNAs from all plant libraries and all insect libraries (D) in the run.
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Additional file 7:
Small RNA probes for northern blot analysis.
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Additional file 8:
Table S6.sRNA sequences and raw counts from insect feeding experiment parsed against miRBase v17.
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