Table 2

Statistics for alignment of sequence reads from the 352 kb region associated with theGreyallele
Breed
Lipizzaner Arabian Noriker Icelandic Knabstrupper Appaloosa Quarter Horse
Greygenotype G/G g/g g/g g/g g/g g/g g/g
Reads Av. cover 96 52 7 102 29 10 101
SNPs Homozygous 101 103 133 422 67 18 100
Heterozygous 6 13 6 3 247 47 145
Total 107 116 139 425 314 65 245

Data from eight horses representing seven different breeds were compared with the horse genome reference sequence (Sep. 2007 Broad/EquCab2 assembly). SNP calling was performed based on alignments with the horse reference sequence.

Sundström et al.

Sundström et al. BMC Genomics 2012 13:365   doi:10.1186/1471-2164-13-365

Open Data