Table 2

Read counts of significant genes under control and stress treatments
Gene_id KC1 MC1 PC1 KS1 MS1 PS1 logFC FDR
Eucgr.K02440 145 81 98 0 0 0 −35.5 2E-35
CUFF.8283 0 0 0 20 4 22 31.8 2E-06
Eucgr.L01022 0 1 1 82 3 161 5.8 8E-17
Eucgr.I02271 6 1 43 3025 1982 7510 7.1 1E-62
Eucgr.I01041 120 39 138 0 0 0 −35.3 3E-33
Eucgr.H04038 0 2 3 790 199 634 7.4 7E-44
Eucgr.J00639 2 2 6 248 187 563 5.8 5E-33
Eucgr.J00493 0 0 0 727 130 181 36.4 2E-43
Eucgr.H00163 4 0 1 382 218 461 6.9 6E-39
Eucgr.G01843 0 0 0 86 47 113 34.3 6E-22
Eucgr.A02965 10 44 91 0 0 0 −34.4 3E-23
Eucgr.F03575 89 17 40 0 0 0 −34.3 1E-22
Eucgr.F02915 26 25 90 0 0 0 −34.3 2E-22
Eucgr.F02733 0 1 0 60 96 38 7.1 3E-20
Eucgr.F02646 467 635 778 0 0 0 −38.1 2E-67
Eucgr.F01093 13 16 16 2534 973 2670 6.2 1E-49
CUFF.28412 0 0 0 843 400 1068 37.5 3E-56
Eucgr.F00644 2 11 10 4666 2578 10230 8.6 2E-75
Eucgr.F00195 41 44 17 0 0 0 −33.9 3E-19
Eucgr.E03257 1 1 3 251 142 436 6.5 3E-33

M = Mt.Isa; K = Katherine; P = Petford; C1- control; S1- stress; logFC – log fold change; FDR-false discovery rate.

Read counts of top 20 most differentially expressed transcripts under control (C1) and stress conditions (S1). E. grandis gene names are used when the predicted genes are mapped to E. grandis gene coordinates otherwise the predicted gene names are used with a pre-fix ‘CUFF’.

Thumma et al.

Thumma et al. BMC Genomics 2012 13:364   doi:10.1186/1471-2164-13-364

Open Data