|High-quality SNPs identified from the walnut genome after applying the new filters of read mapping depth (≤ 25), SNP mapping quality score (≥ 30), and folded variantfrequency (statistically not different from 0.5)|
|BES||No of BESs||No of BESs with SNPs||Total SNPs||Number of contigs with SNPs||Predicted true SNP rate(a)|
(a) Estimated based on the logistic regression model in 2,765 validated SNPs (Table 6).
You et al. BMC Genomics 2012 13:354 doi:10.1186/1471-2164-13-354