Table 4

Comparison of several SNP identification criteria and ADT design scores in scorable and unscorable SNPs
SNP Number of SNPs ADT design score Average quality score of reference SNP quality score of reference SNP mapping quality score Read mapping depth Folded variant frequency
Scorable 5,420 0.973 ± 0.052(a) 54.6 ± 9.8 59.1 ± 6.8 34.0 ± 1.8 24.9 ± 15.7 0.35 ± 0.10
Unscorable 580 0.977 ± 0.047 54.5 ± 9.5 59.2 ± 6.9 34.0 ± 1.8 23.1 ± 14.1 0.35 ± 0.10
P value of t test 0.0677 0.9177 0.7894 0.8213 0.0086** 0.9896

(a) average ± standard deviation; ** represents statistical significance at a 0.01 probability level.

You et al.

You et al. BMC Genomics 2012 13:354   doi:10.1186/1471-2164-13-354

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