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Open Access Research article

Genomic and proteomic characterization of SuMu, a Mu-like bacteriophage infecting Haemophilus parasuis

Emilie S Zehr1*, Louisa B Tabatabai1 and Darrell O Bayles2

Author Affiliations

1 U. S. Department of Agriculture, Ruminant Diseases and Immunology, National Animal Disease Center, Agricultural Research Service, Ames, IA, 50010, USA

2 U. S. Department of Agriculture, Infectious Bacterial Diseases, National Animal Disease Center, Agricultural Research Service, Ames, IA, 50010, USA

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BMC Genomics 2012, 13:331  doi:10.1186/1471-2164-13-331

Published: 23 July 2012

Additional files

Additional file 1:

Table S1. Comparison of bacteriophage SuMu proteins identified in this study to homologous to enterobacteriophage Mu proteins; comparison of amino acid lengths and % homology of 17 bacteriophage SuMu proteins to enterobacteriophage Mu proteins, E-values are given.

Format: XLS Size: 31KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 2:

Table S2. Comparison of SuMu proteins identified in this study to homologous Mu-like proteins; comparison of amino acid lengths and % homology of 25 bacteriophage SuMu proteins to Mu-like bacteriophage proteins, E-values are given.

Format: XLS Size: 34KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 3:

Table S3. Homologs of bacteriophage SuMu from 1-D and 2-D SDS-PAGE gels identified by mass spectrometry; identification of 20 homologs of bacteriophage SuMu using mass spectrometry; scores, accession numbers, predicted MW/pI, number of peptides matched, % amino acid coverage are shown.

Format: XLS Size: 36KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

P1.mzML YP_239811, Phage tape measure protein, TP901 family, Staphylococcus aureus phage 2638A (Siphoviridae).

Format: ZIP Size: 648KB Download file

Open Data

Additional file 5:

P2.mzML YP_004324195, Tail sheath monomer, Synechococcus phage S-SSM7 (Myoviridae).

Format: ZIP Size: 719KB Download file

Open Data

Additional file 6:

P3.mzML YP_249019, Tail fiber protein, H. influenzae 86-028NP, similar to Haemophilus phage HP1 (Myoviridae).

Format: ZIP Size: 281KB Download file

Open Data

Additional file 7:

P6.mzML P44242, Defective tail fiber protein, H. influenzae Rd KW20 Mu-like prophage FluMu (Myoviridae).

Format: ZIP Size: 482KB Download file

Open Data

Additional file 8:

P9.mzML P44225, gp29, DUF935, portal protein, H. influenzae Rd KW20 Mu-like prophage FluMu (Myoviridae).

Format: ZIP Size: 453KB Download file

Open Data

Additional file 9:

P10.mzML P44236, gp42, putative tape measure protein, H. influenzae Rd KW20 Mu-like prophage FluMu (Myoviridae).

Format: ZIP Size: 611KB Download file

Open Data

Additional file 10:

P12.mzML EGT81757, Prophage integrase, H. haemolyticus M21639.

Format: ZIP Size: 427KB Download file

Open Data

Additional file 11:

P15.mzML P96343, DNA transposition protein B (transposase), H. influenzae Rd KW20 Mu-like prophage FluMu (Myoviridae).

Format: ZIP Size: 329KB Download file

Open Data

Additional file 12:

P16.mzML NP_873073, gp32, Mu I protein, H. ducreyi 35000HP, Mu-like prophage (Myoviridae).

Format: ZIP Size: 339KB Download file

Open Data

Additional file 13:

P17.mzML P46496, DNA binding protein Ner, H. influenzae Rd KW20 Mu-like prophage FluMu (Myoviridae).

Format: ZIP Size: 388KB Download file

Open Data

Additional file 14:

P20.mzML NP_463477, COG3941, putative tape measure protein, Mu-like prophage protein, Listeria phage A118 (Siphoviridae).

Format: ZIP Size: 228KB Download file

Open Data

Additional file 15:

P21.mzML YP_001604090, Tail sheath protein, Synechococcus phage syn9, T4-like (Myoviridae).

Format: ZIP Size: 254KB Download file

Open Data

Additional file 16:

P22.mzML YP_398561, Phage-related minor tail protein; pfam10145, Clostridium phage c-st (Myoviridae).

Format: ZIP Size: 288KB Download file

Open Data

Additional file 17:

P23.mzML P44227, gp34 (gpT) major head subunit, H. influenzae Rd KW20 Mu-like prophage FluMu (Myoviridae).

Format: ZIP Size: 435KB Download file

Open Data

Additional file 18:

P24.mzML Q01259, gp30, Mu F protein, Enterobacteriophage Mu (Myoviridae), Mu-like.

Format: ZIP Size: 271KB Download file

Open Data

Additional file 19:

P25.mzML O05069, Transposase A, H. influenzae Rd KW20 Mu-like prophage FluMu (Myoviridae).

Format: ZIP Size: 699KB Download file

Open Data

Additional file 20:

ESI-Sample003.mzML P10927, Baseplate wedge protein 9, E. coli enterobacteria phage T4 (Myoviridae).

Format: ZIP Size: 4.9MB Download file

Open Data

Additional file 21:

ESI-Sample004.mzML P03744, gp37 long tail fiber, receptor recognizing protein, E. coli enterobacteria phage T4 (Myoviridae) and Q9T1X2 Lysozyme/muramidase/endolysin, Enterobacteriophage Mu (Myoviridae).

Format: ZIP Size: 4.9MB Download file

Open Data