Figure 3 .

AgriGO analyses of differentially expressed genes obtained with reference sets P0 and P1 (a), A0, A1 and A2 (b) and microarrays (c). With microarrays, category ‘response to stimulus’ was enriched in P. fastigiatum and categories ‘cellular process’, ‘metabolic process’, ‘localization’ and ‘establishment of localization’ were enriched in P. enysii (c). The same categories were enriched with tag profiling when using the P. fastigiatum reference ESTs with category ‘response to stimulus’ also enriched in P. enysii (a). Also, similar enrichment patterns were found when using A. thaliana ESTs as a reference, except for the differences between species being not as clear for some categories when mapping with no mismatch (A0).

Voelckel et al. BMC Genomics 2012 13:322   doi:10.1186/1471-2164-13-322
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