Additional file 18.

Full map of 16 polysaccharide structures with the addition of genes fromA. niger ATCC 1015 specific for each type of bond. The nature of the bonds between the sugar units are noted where they are known. The number of sides on the sugar polygons reflect the number of carbons of the sugar. The first carbon is indicated on all sugars with a 1 to clarify the bond configurations. Carbons are numbered clockwise from the first carbon with the two last carbons of the sugar (hexose or pentose) on the same corner of the polygon. The oligos are hypothetical hydrolysis products and sugars that appear due to the action of exo-acting enzymes. Type and approximate 2D orientation is shown for each of the chemical bonds connecting sugars and/or acids. Next to each bond, one can find verified and hypothetical enzymes in A. niger ATCC 1015 capable of catalyzing the hydrolysis of the bond. The bottom panel denotes CAZy-families for each of the genes. See Additional Files 1-16 for details on literature references for structures.

Format: PDF Size: 161KB Download file

This file can be viewed with: Adobe Acrobat Reader

Andersen et al. BMC Genomics 2012 13:313   doi:10.1186/1471-2164-13-313