Table 5

Comparison of miRNA target annotations between the Williams and Heinong44 data sets
Annotations Unique to Williams Annotations Unique to Heinong44 Annotations Found in Both Data Sets
Alcohol/Zinc-binding dehydrogenase Polyubiquitin protein AGO protein
Alg9-like mannosyltransferase Plasmamembrane protein Auxin Response Factor
Aluminium induced protein Auxin signaling F-BOX protein Copper/zinc superoxide dismutase
Anion Exchange protein NADP+ Growth Regulating Factor
Ankyrin repeat containing protein MtN19-like protein HD-ZIP Transcription Factor
Ataxin-2 domain containing protein Serine-type endopeptidase MYB family Transcription Factor
bHLH family protein elongation factor No Apical Meristem protein (NAC Family)
BRE Expressed protein NSF attachment protein SBP domain containing protein
BTB/POZ domain containing protein Autophagy protein TCP family transcription factor
Calcineurin-like phosphoesterase embryo-related protein Nuclear Factor-YA
Cellulose synthase AP2 transcription factor Zinc Finger Family protein
Cyclin family protein heat shock cognate protein
Dynamin family protein expressed protein
EF-hand containing protein 60 S ribosomal protein
Elongation Factor S-II Disulfide isomerase
F-box domain containing protein FAD linked oxidase family protein
Ferredoxin related protein Auxin inducible transcription factor
Glyoxal oxidase related protein ribulose-1,5-bisphosphate carboxylase
GTPase-activating protein
Integrase domain containing protein
lectin domain containing protein
LRR containing protein
mRNA capping enzyme
NADP/FAD oxidoreductase
NB-ARC domain containing protein
No Functional Annotation
PAZ domain containing protein
Peptide transporter family protein
Permease family protein
PPR repeat containing protein
Protein tyrosine kinase
Putative methyltransferase
Ras family protein
Ribose 5-phosphate isomerase
Serine protease inhibitor family
Serine-threonine protein kinase
START Domain containing protein
TIR domain containing protein
Transcription factor TFIID
Transferase family protein
Transmembrane protein 14 C
Transporter family protein
UBA domain containing protein
Ubiquitin-protein ligase
Uncharacterized conserved protein
Universal stress protein family

Williams data sets from this study were generated using five degradome libraries of early, mid and late soybean seed developmental stage. The Heinong44 data set represented an earlier seed stage [21].

Shamimuzzaman and Vodkin

Shamimuzzaman and Vodkin BMC Genomics 2012 13:310   doi:10.1186/1471-2164-13-310

Open Data