Table 1

Analysis of degradome reads from five different libraries matched to the soybean genome
Library namea Raw Reads 20-21 nt reads Genome matched readsb Transcriptome matched Readsb
Cot25 27802207 25926963 25300772 24754628
SC25 41395866 40296710 39308067 37957708
Cot100 10473739 9088079 8902528 8646558
SC100 26326261 25931744 25289389 24436953
Cot300 44451740 41517379 40494429 40335132

aCot25 and SC25 are libraries from cotyledons and seed coats dissected from early-maturation green seed of 25–50 mg fresh wt.; Cot100 and SC100 are cotyledons and seed coats dissected from mid-maturation green seed of 100–200 mg fresh weight range; Cot300 are cotyledons dissected from late maturation yellow seeds of 300–400 mg weight range.

bGenome matched reads indicate the number of reads of 20 or 21 nt that matched to Glycine max genome sequence available in Phytozome. Transcriptome matched reads indicate the number of reads that matched to Glycine max transcriptome (Glyma models) available in Phytozome [23].

Shamimuzzaman and Vodkin

Shamimuzzaman and Vodkin BMC Genomics 2012 13:310   doi:10.1186/1471-2164-13-310

Open Data