Additional file 11.

Putative conserved motifs predicted in the OsGELP and known plant GDSL esterase/lipase proteins. The consensus sequence, regular expression, amino acid length, number of the OsGELP proteins containing the motif, and E-value of each 45 predicted motifs are given. The overall height of each column in the motif LOGO indicates sequence conservation at that position, whereas the height of symbols within each column presents relative frequency of the corresponding amino acid. GDSL lipase consensus block distribution is as follows: block I is located in motif 3, block II in motif 5, block III in motif 6, and block V in motif 2. Four strictly conserved catalytic residues Ser-Gly-Asn-HisxxAsp from conserved blocks I, II, III, and V are coloured red in regular expression of corresponding motifs. Regular expression pattern sequences that are coloured in blue and green represent possible sequences for secondary structure elements like helix or sheet, respectively.

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Chepyshko et al. BMC Genomics 2012 13:309   doi:10.1186/1471-2164-13-309