Table 1

RNAseq read alignment statistics
NGS library P. sojae mycelia (4 replicates) P. sojae-infected soybean (4 replicates)
P. sojae PS1 PS2 PS3 PS4 WI1 WI2 WI3 WI4
assembly v1.0 8491356 8569508 14643646 4748944 8645377 10382780 7331138 7272520
(54.2%)* 51.4% (50.8%) (37.6%) (13.7%) (17.5%) (11.1%) (13.1%)
v5.0 8909517 8924547 15248004 5141252 6862159 8978294 7067909 6713689
(56.9%) (53.5%) (52.9%) (40.7%) (10.8%) (15.1%) (10.7%) (12.1%)
NGS library H. arabidopsidis-infected Arabidopsis (5 replicates)
H. arabidopsidis sample 1 sample 2 sample 3 sample 4 sample 5
assembly v8.3 247198 72427 82827 295351 517242
(21.4%) (16.8%) (16.4%) (28.7%) (26.6%)

*Numbers and percentages of RNAseq reads aligned with the assembled reference genome.

Tripathy et al.

Tripathy et al. BMC Genomics 2012 13:303   doi:10.1186/1471-2164-13-303

Open Data