(A) Screenshot of transcript assembly page. The circled area representing the genomic location of the transcript links into the transcript browser (B). The on-the-fly BLAST link carries out a nr blast against Genbank (C). The reads assembly link opens to the SNP viewer (D). Note the SNP viewer has the reference genome sequence on top which is static on the screen and as one scrolls down, it follows along, so that users can always overlap transcript sequences against the reference genome.
Tripathy et al. BMC Genomics 2012 13:303 doi:10.1186/1471-2164-13-303