Table 2

Molecular evolution in diploid and allopolyploid cotton
Comparision Number of Contigs1 Total sites Mean dS (Standard Dev.) Mean dN (Standard Dev.) Mean dN/dS (Standard Dev.)
A2 vs. D5 12,517 13,867,911 0.036 (0.032) 0.009 (0.009) 0.308 (0.412)
AT vs DT - G. barbadense 7,151 9,843,949 0.040 (0.030) 0.009 (0.009) 0.289 (0.354)
AT vs DT - G. hirsutum 7,972 11,726,538 0.039 (0.031) 0.010 (0.010) 0.317 (0.411)
A2 vs AT - G. barbadense 9,406 11,387,549 0.005 (0.01) 0.002 (0.003) 0.214 (0.313)
A2 vs AT - G. hirsutum 9,997 12,421,297 0.006 (0.01) 0.002 (0.004) 0.263 (0.409)
D5 vs DT - G. barbadense 9,236 12,237,260 0.009 (0.019) 0.003 (0.004) 0.240 (0.318)
D5 vs DT - G. hirsutum 9,979 13,980,550 0.010 (0.014) 0.003 (0.005) 0.290 (0.409)

1See Molecular evolution section in the Materials and Methods for further detail about contig selection.

Flagel et al.

Flagel et al. BMC Genomics 2012 13:302   doi:10.1186/1471-2164-13-302

Open Data