Contig assembly and SNP discovery. The de novo assembly was based on paired ends from "Creta 4". The alignment of paired ends was used to discover SNPs, using MAQ software. "Fully informative" SNP sites were those where sequence information was available for all three parental accessions.
Scaglione et al. BMC Genomics 2012 13:3 doi:10.1186/1471-2164-13-3