Open Access Highly Accessed Research article

RAD tag sequencing as a source of SNP markers in Cynara cardunculus L

Davide Scaglione1, Alberto Acquadro1, Ezio Portis1, Matteo Tirone1, Steven J Knapp2 and Sergio Lanteri1*

Author Affiliations

1 Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy

2 Institute for Plant Breeding, Genetics, and Genomics, University of Georgia, 111 Riverbend Rd., 30602 Athens, Georgia USA

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BMC Genomics 2012, 13:3  doi:10.1186/1471-2164-13-3

Published: 3 January 2012

Additional files

Additional file 1:

The data provided represent the assembled RAD contigs in fasta format. RAD contigs.

Format: FASTA Size: 7.2MB Download file

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Additional file 2:

The data provided represent the list of the RAD contigs which were annotated with the Blast2Go pipeline. Contigs annotation.

Format: TXT Size: 2.8MB Download file

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Additional file 3:

The data provided represent the list of the RAD contigs which were mapped in the KEGG's pathway. KEGG's pathways mapping.

Format: TXT Size: 402KB Download file

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Additional file 4:

Distributions of K-mers using random dinucleotides. distributions of K-mers.

Format: PDF Size: 144KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 5:

Comprehensive list of SNPs and 1-2 bp indels. CcRAD1 SNP list.

Format: TXT Size: 4.7MB Download file

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Additional file 6:

list of the "fully informative" SNPs and test cross markers. CcRAD2 SNP list.

Format: XLS Size: 10MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data