Figure 4 .

CodY regulon prediction by PePPER all-in-one. The inserted table shows the CodY-TFBS[MG1363] found in L. lactis IL1403 (p-value < 10-5); the drawings show the intergenic regions upstream of CodY regulon members. At the bottom of this figure the WebLogo is shown of the TFBS derived from the MEME search. Predicted promoters with a correct spacing between −35 and −10 are colored dark green. Green arrows indicate predicted TSSs, light green boxes represent individual conserved −10 and −35 DNA motifs.

de Jong et al. BMC Genomics 2012 13:299   doi:10.1186/1471-2164-13-299
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