Table 1

N. nervosa transcriptome annotation summary
Number of sequences
Isotigs (3,005) Singletons (21,881) Combined set (24,886)
Viridiplantae-NR
Sequences with positive BLAST matches 2,762 (92%) 12,735 (58%) 15,497 (62%)
Sequences annotated with Gene Ontology (GO) terms 2,238 (74%) 9,596 (44%) 11,834 (47%)
Sequences without detectable BLAST matches 243 (8%) 9,146 (42%) 9,389 (38%)
Sequences assigned to know Enzyme Commission category 931 (31%) 1,424 (6%) 2,355 (9%)
Fagaceae
Sequences with positive BLAST matches 2,923 (97%) 17,515 (80%) 20,438 (82%)
Sequences without detectable BLAST matches 82 (3%) 4,365 (20%) 4,447 (18%)
Sequences annotated with Gene Ontology (GO) terms (“novel genes”) 12 (0.4%) 490 (2%) 502 (2%)

Numbers and percentages of 454 sequences in the assembled isotigs, singletons and unigenes with significant matches against NCBI NR proteins Viridiplantae filtered database and Fagaceae unigenes.

Torales et al.

Torales et al. BMC Genomics 2012 13:291   doi:10.1186/1471-2164-13-291

Open Data