Open Access Research article

Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. Alpina): assembly, annotation and molecular marker discovery

Susana L Torales1*, Máximo Rivarola25, María F Pomponio1, Paula Fernández25, Cintia V Acuña2, Paula Marchelli35, Sergio Gonzalez2, María M Azpilicueta3, Horacio Esteban Hopp24, Leonardo A Gallo3, Norma B Paniego25 and Susana N Marcucci Poltri2*

Author Affiliations

1 Instituto de RecursosBiológicos, IRB, Instituto Nacional de Tecnología Agropecuaria (INTA Castelar), CC 25, Castelar, B1712WAA, Argentina

2 Instituto de Biotecnología, CICVyA, Instituto Nacional de Tecnología Agropecuaria (INTA Castelar), CC 25, Castelar, B1712WAA, Argentina

3 EEA Bariloche, Genética Ecológica y Mejoramiento Forestal, Instituto Nacional de Tecnología Agropecuaria (INTA, Bariloche), CC 277, 8400, Bariloche, Argentina

4 Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina

5 CONICET, Buenos Aires, Argentina

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BMC Genomics 2012, 13:291  doi:10.1186/1471-2164-13-291

Published: 2 July 2012

Additional files

Additional file 1:

KEGG Pathway maps. This table provides information on the enzymes putatively encoded by the RNA sequences, based on homology prediction and their associated pathways. This includes KEGG maps, enzyme names, and sequences ID.

Format: XLS Size: 72KB Download file

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Additional file 2:

In silicoSSRs derived fromNothofagusleaf transcriptome (24,886 unigenes). The data describe the 3,821 SSR: Included are unigenes names, marker ID, Sequence Length (bp), SSR description (# SSRs per seq, repeat length, motif, # Repeats, SSR position (start, stop)), ORF definition (start, stop, SSR in ORF), primers description (sequence of forward and reverse primers), expected product size (bp), similarity matches, E value, similarity mean, #GO, GO terms, Enzymes codes.

Format: XLS Size: 1.3MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data