Table 1

Pfam domains less abundant inAscosphaera apiscompared with related ascomycete species
Pfam domain A. apis A. capsulatus A. otae A. fumigatus C. immitis M. acridum N. crassa
p450 11 29 82 77 40 87 42
Pkinase 54 146 176 113 138 147 109
Ankyrin 25 40 60 61 46 84 46
F-box 15 31 43 30 36 34 33
Fungal transcription factor 32 41 60 142 53 108 60
All zinc finger 210 324 292 439 329 331 304
All FAD binding 26 54 60 113 54 88 71
All NAD binding 20 28 50 82 36 66 41
All methyltransferase 37 52 93 94 59 88 79
All Rossman fold 234 283 379 609 338 520 406
Total domain types 2,627 2,720 2,917 3,103 2,833 3,029 3,038
Total domain matches 7,467 8,484 9,708 12,205 9,062 11,027 9,856
Undetected domains found in all other species 187 126 17 31 85 40 26
Total proteins searched 6,992 9,313 8,765 9,631 10,440 9,850 9,841

Domains were selected in which A. apis has at least six fewer proteins with a match (Eā€‰<ā€‰0.1) than all other species examined. Only domains present in all seven ascomycete species were considered (Ascosphaera apis, Ajellomyces capsulatus, Arthroderma otae, Aspergillus fumigatus, Coccidioides immitis, Metarhizium acridum, Neurospora crassa).

Cornman et al.

Cornman et al. BMC Genomics 2012 13:285   doi:10.1186/1471-2164-13-285

Open Data