Table 6

SNPs variable within and between different groups of botanical varieties selected for validation
Polymorphic between 1 Total SNPs SNPs with MAF <0.7 Selected Validated
All No Is60 All No Is60
Monomorphic Within Monomorphic Within CS60 MAF1 CS60 MAF0.7 CS60 MAF1 CS60 MAF0.7
Piel de Sapo (8) African agrestis (1) conomon (3) 13,168 4,000 6,240 5,361 1,659 2,690 34 33 (97%)
Piel de Sapo (8) conomon (3) African agrestis (1) 15,261 4,226 7,095 6,724 1,894 3,322 24 24 (100%)
cantalupensis (5) conomon (3) African agrestis (1) 13,168 3,559 5,972 5,052 1,354 2,284 12 12 (100%)
momordica (4) Piel de Sapo (8) inodorus (7) African agrestis (1)conomon (3) 5,822 1,739 2,265 2,848 879 1,139 15 14 (93%)
momordica (4) cantalupensis (5) African agrestis (1)conomon (3) 5,102 1,544 2,006 2,305 744 954 24 24 (100%)
Polymorphic in Piel de Sapo 43,363 1,305 19 12 (63%)
Polymorphic in all groups 668 9 431 3 0 0 16 13 (81%)

1 Pool number indicated.

Blanca et al.

Blanca et al. BMC Genomics 2012 13:280   doi:10.1186/1471-2164-13-280

Open Data