Table 4

Statistical comparison of called methylated genic features between tissues.

Male catkin

Female catkin

Leaf

Root

Xylem

Phloem

Bud


Male catkin

2,095/4,837

0.028

0.013

0.006

0.021

0.0081

0.0066


Female catkin

0.070

3,397/2,346

0.018

0.024

0.013

0.014

0.069


Leaf

0.021

0.0049

3,106/1,726

0.16

0.036

0.13

0.079


Root

0.023

0.0075

0.050

3,965/2,031

0.029

0.11

0.094


Xylem

0.026

0.0045

0.028

0.031

1,940/1,431

0.10

0.048


Phloem

0.011

0.0039

0.084

0.11

0.071

2,473/1,505

0.065


Bud

0.0043

0.037

0.035

0.053

0.023

0.031

3,642/1,718


Sets of significantly methylated gene-associated features compared among tissues determined by the RPKM method. Gene counts per tissue are shown on the diagonal as: number with significantly methylated promoter/number with significantly methylated gene body. Proportions of these sets shared by pairs of tissues is shown, with promoter commonalities above the diagonal and gene body commonalities below the diagonal.

Vining et al. BMC Genomics 2012 13:27   doi:10.1186/1471-2164-13-27

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