Table 1

Summary of MeDIP-seq experimental results.

Tissue

Biological Replicates

Platform

Lanes Sequenced

Total Reads (Illumina Yield)

No. Mapped Reads

Percent Mapped Reads


Spring bud

2

GAII

5

97,642,336

8,880,982

9.1

Autumn bud

1

GAII

3

27,397,024

10,836,547

39.6

Winter bud

1

GAII

3

26,301,421

9,734,237

37

Male catkin

2

GAII

5

78,702,151

24,870,095

31.6

Female catkin

2

GAII

5

63,861,351

17,212,810

27

Leaf

2

GA

4

70,264,008

13,524,682

19.2

Root

2

GA

5

81,017,743

9,284,891

11.5

Phloem

2

GAII

4

38,358,479

22,737,382

59.3

Xylem

1

GAII

5

33,649,277

12,278,525

36.5


Totals

39

517,193,790

129,360,151


Mapped reads include all non-clonal reads, allowing up to two mismatches.

Vining et al. BMC Genomics 2012 13:27   doi:10.1186/1471-2164-13-27

Open Data