Table 3

Putative proteins identified duringPhakopsora pachyrhiziappressoria formation grouped into functional categories using the Munich Information Center of Protein Sequences (MIPS) Functional Catalogue
Protein ID1 GeneInfo Identifier No. Description Species Peptides Score
01. Metabolism
PHAP0002 gi|254121616 2-isopropylmalate synthase Melampsora larici-populina 4 151
PHAP0008 gi|120528021 5-methyltetrahydropteroyl Phakopsora pachyrhizi 3 116
triglutamate-homocysteine
methyltransferase
PHAP0010 gi|120509127 acetyl-CoA C-acyltransferase P. pachyrhizi 11 649
PHAP0031 gi|120522633 deoxyuridine 5'-triphosphate P. pachyrhizi 6 416
nucleotidohydrolase
PHAP0032 gi|120523312 dienelactone hydrolase P. pachyrhizi 10 243
PHAP0043 gi|120500948 glycine dehydrogenase P. pachyrhizi 3 115
PHAP0064 gi|120519389 isocitrate dehydrogenase P. pachyrhizi 5 102
PHAP0065 gi|120515452 isocitrate lyase P. pachyrhizi 4 147
PHAP0071 gi|290897165 NADP-dependent mannitol M. larici-populina 3 83
dehydrogenase
PHAP0103 gi|90563667 methylene-tetrahydrofolate Leucosporidium scottii 3 89
dehrogenase
PHAP0109 gi|254151530 UTP-glucose-1-phosphate M. larici-populina 7 129
uridylyltransferase
02. Energy
PHAP0027 gi|120521145 cytochrome C P. pachyrhizi 10 428
PHAP0089 gi|120515891 pyruvate dehydrogenase beta P. pachyrhizi 12 339
PHAP0101 gi|120500717 succinate-CoA ligase beta P. pachyrhizi 6 171
PHAP0107 gi|161646983 ubiquinol-cytochrome C Sporobolomyces roseus 6 78
reductase
10. Cell cycle and DNA processing
PHAP0024 gi|290902725 cell division cycle protein Melampsora medusae 8 214
cdc48 f. sp. deltoidis
PHAP0044 gi|118187570 GTP binding protein/GTPase Ustilago maydis 5 91
PHAP0074 gi|254164953 nuclear segregation protein M. larici-populina 3 66
PHAP0076 gi|66651924 nucleoside diphosphate kinase Uromyces viciae-fabae 5 173
PHAP0096 gi|120423194 septin Uromyces appendiculatus 1 52
11. Transcription
PHAP0084 gi|120503605 polyadenylate binding protein P. pachyrhizi 9 379
12. Protein Synthesis
PHAP01172 gi|120521780 40 S ribosomal protein S16 P. pachyrhizi 5 89
PHAP0006 gi|282815640 40 S ribosomal protein S19 Puccinia tricina 10 368
PHAP01182 gi|120498576 60 S acidic ribosomal protein P. pachyrhizi 5 88
PHAP0009 gi|120522205 60 S ribosomal protein L10 P. pachyrhizi 13 732
14. Protein Fate (folding, modification, destination)
PHAP0026 gi|169738476 cyclophilin U. appendiculatus 6 118
PHAP00383 gi|120515849 glucose-regulated protein P. pachyrhizi 21 379
PHAP0050 gi|290908126 hsp-10 protein Melampsora occidentalis 6 198
PHAP00733 gi|120425527 neddylin/ubiquitin U. appendiculatus 3 129
PHAP0087 gi|120523430 proteasome subunit beta P. pachyrhizi 9 343
PHAP01133 gi|120515648 vacuolar protease A P. pachyrhizi 7 153
16. Structural & Protein Binding
PHAP0013 gi|120527115 actin lateral binding protein P. pachyrhizi 19 494
18. Regulation
PHAP0097 gi|156597317 serine-threonine phosphatase Microbotryum violaceum 3 60
PHAP0099 gi|120527960 sterol binding protein P. pachyrhizi 11 113
20. Cellular transport, transport facilitation and transport routes
PHAP01202 gi|120511797 ADP, ATP carrier protein P. pachyrhizi 6 96
PHAP0033 gi|120523715 electron transport flavoprotein P. pachyrhizi 5 200
alpha
PHAP0067 gi|120512188 mitochondrial import receptor P. pachyrhizi 9 423
TOM40
PHAP0072 gi|169735819 nascent polypeptide-associated U. appendiculatus 2 109
complex subunit alpha
PHAP0100 gi|254113321 succinate dehydrogenase M. larici-populina 8 302
32. Cell Rescue, Defense and Virulence
PHAP0029 gi|118188717 cytochrome C peroxidase U. maydis 6 195
PHAP0040 gi|120497372 glutaredoxin-1 P. pachyrhizi 9 323
PHAP0048 gi|120503688 heat shock HSS1 P. pachyrhizi 7 376
PHAP0069 gi|120509299 NADH-cytochrome b5 P. pachyrhizi 5 321
reductase
PHAP0085 gi|120514870 polyubiquitin P. pachyrhizi 12 410
38. Transposable elements
PHAP0105 gi|254151689 transposon M. larici-populina 1 47
99 Unclassified
PHAP0030 gi|120518530 cytoplasm protein P. pachyrhizi 5 313
PHAP01292,3 gi|120521555 hypothetical protein P. pachyrhizi 3 111
PHAP0051 gi|120523258 hypothetical protein P. pachyrhizi 2 191
PHAP00523 gi|120510614 hypothetical protein P. pachyrhizi 12 289
PHAP0093 gi|120519941 hypothetical protein P. pachyrhizi 15 512
PHAP0053 gi|120534989 hypothetical protein P. pachyrhizi 5 554
PHAP00542 gi|103096425 hypothetical protein U. maydis 3 65
PHAP0055 gi|120521631 hypothetical protein P. pachyrhizi 5 172
PHAP0057 gi|120524713 hypothetical protein P. pachyrhizi 5 141
PHAP0058 gi|120506400 hypothetical protein P. pachyrhizi 10 190
PHAP00593 gi|120508009 hypothetical protein P. pachyrhizi 3 119
PHAP0060 gi|120518154 hypothetical protein P. pachyrhizi 15 402
PHAP0061 gi|120519874 hypothetical protein P. pachyrhizi 4 98
PHAP0062 gi|120519876 hypothetical protein P. pachyrhizi 6 194

1Predicted

kopsora achyrhizin protei (PHAP).

2Proteins identified from the appressoria water fraction.

3Proteins containing a secretion signal.

Stone et al.

Stone et al. BMC Genomics 2012 13:269   doi:10.1186/1471-2164-13-269

Open Data