Table 3 |
|||||||||
| SNVs identifiedby whole genome sequencing | |||||||||
| Isolate | Isolate | MSP7 gene family | All MSP gene families | SERA gene family | Metabolic genes | ||||
| Syn | Non-syn | Syn | Non-syn | Syn | Non-syn | Syn | Non-syn | ||
| IQ07a | 16861 | 1.82 | 1.64 | 2.7 | 4.1 | 7.07 | 5.54 | 0.45 | 0.6 |
| Acre3b | 0 | na | na | na | na | na | na | na | na |
| SA-94 | 17871 | 1.93 | 1.57 | 3.2 | 4.41 | 6.94 | 5.6 | 0.37 | 0.59 |
| SA-95 | 18916 | 2.03 | 1.77 | 2.48 | 4.1 | 7.3 | 5.03 | 0.35 | 0.64 |
| SA-96 | 17946 | 1.79 | 1.81 | 3.23 | 4.21 | 6.64 | 5.61 | 0.54 | 0.7 |
| SA-97 | 18321 | 1.86 | 1.34 | 2.81 | 4.19 | 7.23 | 5.91 | 0.44 | 0.68 |
| SA-98 | 16596 | 1.55 | 1.28 | 2.89 | 3.98 | 6.94 | 5.04 | 0.49 | 0.68 |
Abbreviations: SNV, single nucleotide variant; Syn, synonymous; Non-syn, non-synonymous; na, not available.
apositive control - leukocyte filtered, bnegative control.
Bright et al. BMC Genomics 2012 13:262 doi:10.1186/1471-2164-13-262
