Additional file 9: Figure S1.

Work Flow. Schematic of the workflow with intermediate stages of the data shown in blue boxes. The inputs to the process are shown in red and comprise the annotated reference genomes and the short read sequencing data of the study isolates. The results are shown in green and include the phylogeny of the complex, novel CDS within each of the isolates, core and accessory genomes of the complex and putative ancestral pseudogenes.

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Doig et al. BMC Genomics 2012 13:258   doi:10.1186/1471-2164-13-258