Additional file 2: Figure S2.

Percentage DNA difference between isolates. Scatter Plot showing the percentages of DNA missing from references M. marinum “M” (y-axis) and M. ulcerans Agy99 and pMUM001 plasmid (x-axis). The percent missing is calculated by taking the number of zero coverage positions in the short read mapping to reference and dividing by total length of the reference. The dotted lines show the percentage missing from either reference to distinguish the M. marinum isolates from the MPM isolates. The clusterings are coloured as follows with the number in each cluster in brackets; M. marinum isolates (5) – blue, Fish and frog isolates (5) – green, Japanese isolate (1) – pink, French Guiana isolates – purple, Australian isolates (10) – gold, African Isolates (13) – red.

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Doig et al. BMC Genomics 2012 13:258   doi:10.1186/1471-2164-13-258