Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon
1 The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, EH25 9RG, UK
2 Institute of Evolutionary Biology, Ashworth Laboratories, King’s Buildings, University of Edinburgh, Edinburgh, EH9 3JT, UK
3 Landcatch Natural Selection Ltd., Alloa, Clackmannanshire, FK10 3LP, UK
4 The GenePool Genomics Facility, Ashworth Laboratories, King’s Buildings, University of Edinburgh, Edinburgh, EH9 3JT, UK
5 Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK
BMC Genomics 2012, 13:244 doi:10.1186/1471-2164-13-244Published: 15 June 2012
Additional file 1:
Details of Family 1 RAD loci, number of RAD alleles and fragment counts for all individuals.
Format: TXT Size: 17.6MB Download file
Additional file 2:
Details of Family 2 RAD loci, number of RAD alleles and fragment counts for all individuals.
Format: TXT Size: 18MB Download file
Additional file 3:
List of RAD allele sequences containing SNPs marked using IUPAC ambiguity code.
Format: TXT Size: 422KB Download file
Additional file 4:
List of high-throughput assay SNPs used for QTL mapping and population-wide association analysis.
Format: TXT Size: 6KB Download file
Additional file 5:
Table S1. Details of the primers and SNPs for the BAC contig fps378.
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Additional file 6:
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Additional file 7:
Perl script to merge SNP-containing bi-allelic RAD loci into a single list of sequences with IUPAC ambiguity code (Additional file 3).
Format: TXT Size: 2KB Download file