Table 3

Identification of putative regulatory proteins with high occurrence in egg laying- and feeding-inducedUlmus minorleaves
Pfam accession Gene description # of ESTs GO Biological process Treatment (pptt)
EF EF+ E F MeJA C R
PF00305 Lipoxygenase 1602 lipid biosynthetic process 110 43 33 38 162 38 30.9
No family Sieve element-occluding protein 1545 - 245 40 66 19 86 33 27
PF00199 Catalase 1159 response to stress 73 24 28 25 54 19 6.7
PF00160 Peptidyl-prolyl cis-trans isomerase 773 protein folding 52 15 9 19 34 33 5.3
PF00227 Proteasome subunit 341 response to stress 21 8 5 4 24 9 3.9
PF05564 Auxin-repressed protein 207 signal transduction 26 3 - 2 - - 4.3
PF01717 Methionine synthase 200 methionine biosynthetic process 42 4 - 2 16 9 8.7
PF01641 Methionine sulfoxide reductase 58 catalytic activity 34 1 - - - 5 8.3
No family Protein transport protein SFT2 16 vesicle-mediated transport 78 - - - - - 29.9

Treatments: C (untreated control), E (artificial scratching & eggs transferred), EF (egg deposition & feeding), F (feeding), MeJA (methyl jasmonate), mixed library EF + F. Relative Unitrans abundance calculated on counts by parts per ten thousand (pptt) based on the annotation to Plant UniProt (BLASTx, E-value ≤1e-20). Transcripts correlated on their predicted function to the Pfam = protein family database. R–values >3 were considered as significantly differentially expressed for the respective treatment against C (true positive rate of ~99%) by Test Statistics R [42].

Büchel et al.

Büchel et al. BMC Genomics 2012 13:242   doi:10.1186/1471-2164-13-242

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