Table 4

Observed occurrence of the different SNP types (transitions and transversions)
Type Validation panel polymorphic SNPs Syn. SNPs Non Syn. SNPs
Transition (Ts) AG 325 88 71 11
CT 529 184 169 4
Transversion (Tv) AC 98 28 22 5
AT 49 14 8 3
CG 58 16 12 3
GT 93 20 17 2
TOTAL 1152 350 299 28
% ratio Ts/Tv 2.87 3.48 4.07 1.15

Boussaha et al.

Boussaha et al. BMC Genomics 2012 13:238   doi:10.1186/1471-2164-13-238

Open Data