Table 3

Distribution of the genotyped SNPs in contigs
Number of SNPs/contig Number of SNPs in:
Validation Panel Successfully genotyped Monomorphic Heterozygous True
1 151 133 34 13 86
2 154 126 39 21 66
3 141 115 34 24 57
4 98 79 30 20 29
5 91 69 25 20 24
6 81 72 24 30 18
7 70 53 29 14 10
8 48 39 18 11 10
9 45 40 19 12 9
10 38 29 7 12 10
> 10 235 203 87 85 31
Total 1152 958 346 262 350

The number of SNPs identified within each contig type were summarized for the validation panel and for successfully genotyped, monomorphic, heterozygous and for true SNPs.

Boussaha et al.

Boussaha et al. BMC Genomics 2012 13:238   doi:10.1186/1471-2164-13-238

Open Data