Table 2

Minor allele frequency of validated SNPs
SNPs DH lines INRA SP INRA SY* NCCCWA 3 pop.*
Monomorphic 352 390 367 351 346
Potentially duplicated 262 272 268 266 262
True 344 296 322 341 350
MAF < 0.05 27 7 11 22 21
0.05 > = MAF < 0.10 30 33 30 36 26
0.10 > = MAF < 0.20 58 55 51 73 74
0.20 > = MAF < 0.30 63 55 71 56 66
0.0 > = MAF < 0.40 85 68 77 67 66
0.40 > = MAF < 0.50 81 78 82 87 97
Total count 958 958 957 958 958

SNPs were clustered into different categories based on their observed MAF in rainbow trout DH individuals and in the three population samples analysed

* one snp was not considered for MAF calculation because of genotyping failure in all samples.

Boussaha et al.

Boussaha et al. BMC Genomics 2012 13:238   doi:10.1186/1471-2164-13-238

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