Table 3

Comparison of microarray and q-PCR fold-changes for selected transcripts in breast muscle of BJY or AA chickens
Breed Comparison (days) 21 vs 1 42 vs 1 90 vs 1 120 vs 1
Microarray q-PCR Microarray q-PCR Microarray q-PCR Microarray q-PCR
BJY FABP3 −5.86 −5.99 −3.56 −5.44 −7.90 −6.51 −2.38 −3.78
RXRA 3.64 2.63 4.11 5.44 5.83 9.38 3.08 6.78
MYL10 −152.02 −20.08 −87.27 −12.47 −291.39 −69.91 −141.24 −33.06
FGF4 4.82 3.66 4.24 4.69 11.43 8.55 6.55 9.99
RBP7 4.89 3.56 9.27 6.42 7.14 9.71 2.47 3.53
ACSF3 −2.40 −2.92 −3.98 −3.26 −4.49 −4.61 −3.86 −3.77
DCK −2.49 −2.18 −11.36 −7.45 −19.25 −9.19 −44.86 −12.93
DGAT2 5.38 5.59 2.26 3.24 2.20 2.57 2.30 2.69
FABP5 −2.68 −3.11 −3.57 −3.42 −2.97 −3.07 −3.47 −3.78
AA FABP3 −4.62 −4.56 −4.78 −3.77 −5.01 −7.39 / /
RXRA 2.86 2.5 4.51 4.79 3.48 3.69 / /
MYH4 −30.21 −8.48 −50.39 −12.56 −29.66 −13.53 / /
FGF4 −11.24 −12.54 −9.05 −8.67 −3.60 −4.22 / /
FABP1 12.81 6.97 5.21 4.33 2.23 3.15 / /
PGK1 7.44 6.98 8.13 7.82 10.04 9.53 / /
PLTP 3.62 3.06 2.92 2.45 6.67 4.36 / /
RBP7 −8.04 −9.41 −12.33 −10.95 −2.50 −3.27 / /
THRSP −8.45 −7.99 −6.29 −5.46 −35.01 −19.74 / /

FABP (1, 3, 5), Fatty acid binding protein; RXRA, Retinoid X receptor-alpha; MYL10, Myosin, light chain 10; FGF4, Epidermal growth factor 4; RBP7, Retinol binding protein 7; ACSF3, Acyl-CoA synthetase family member 3; DCK, Deoxycytidine kinase; DGAT2, Diacylglycerol O-acyltransferase homolog 2; MYH4, Myosin, heavy polypeptide 4; PGK1, Phosphoglycerate kinase 1; PLTP, Phospholipid transfer protein; THRSP, Thyroid hormone responsive, SPOT14 homolog; BJY, Beijing-you; AA, Arbor Acres.

Cui et al.

Cui et al. BMC Genomics 2012 13:213   doi:10.1186/1471-2164-13-213

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