Table 2

General features of theG. lovleyistrain SZ plasmid pSZ77
Plasmid
Size (bp) 77,113
GC percentage 53.0
Total number of protein-coding genes 81
Number of pseudogenes 2
Protein-coding genes
Number of intact protein-coding genes 79
- matching annotated homologs 66
- matching genes with hypothetical function only 6
- with no public database matches 7
- in one or more COGs 66
- in energy production COGs 3
- in coenzyme metabolism COGs 18
- predicted as c-type cytochromes 0
- percent with top BlastP match in Geobacter (7 genomes) 11%
- percent with top BlastP match in Pelobacter (2 genomes) 24%
- percent with top BlastP match in other δ-Proteobacteria 37%
Non-protein-coding features
Number of rRNA operons (16S-23S-5S) 0
Number of transfer RNAs 0

Wagner et al.

Wagner et al. BMC Genomics 2012 13:200   doi:10.1186/1471-2164-13-200

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