Table 2

Parameters associated with the QTLs identified in progeny 1 (P1) and progeny (P2) using a one-QTL test
Chr1 Progeny Trait

QTL position

(cM)

C.I.2

(cM)

LRT3 Flanking markers4(Mb)

P-value5

(Chr)

S.L.6
2 P1 CAEC 86 80-92 66.83 31.8-38.3 <0.005 ***
3 P2 CAEC 236 234-241 30.29 94.25-98.25 <0.01 **
19 P1 CAEC 21 17-29 56.01 2.71-3.80 <0.01 **
21 P1 CSW4 3 0-6 21.48 0.40-1.22 <0.05 *
23 P1 CAEC 10 7-15 50.25 1.32-2.74 <0.005 *
23 P1 CSW4d 1 0-6 46.83 0.72-1.32 <0.05 *
26 P2 CAEC 29 21-37 49.30 2.60-3.31 <0.05 *

1Chromosome number.

21-LOD-drop confidence interval (cM).

3Likelihood Ratio Test.

4Positions of the two markers flanking the QTL peak.

5P-values obtained by 1000 chromosome-wide permutations.

6Significance level: *significant at P < 0.05 at the chromosome-wide level, ** significant at P < 0.01 at the chromosome-wide level, *** significant at P < 0.05 at the genome-wide level.

Thanh-Son et al.

Thanh-Son et al. BMC Genomics 2012 13:198   doi:10.1186/1471-2164-13-198

Open Data