Table 4

SNPs > 200 bp outside target regions
Samples Average depth Intronic Splicinga ncRNAb Intergenic Exonic
Non-synonymous Stopgain Stoploss
SureSelect ≥ 5 6194 35 4873 33569 981 25 4
(n = 22) ≥ 10 4297 34 3790 21713 792 17 3
TrueSeq ≥ 5 29372 8 7537 74431 211 4 0
(n = 6) ≥ 10 16252 7 10153 60889 199 4 0
1000 G ≥ 5 2619 11 309 1951 307 6 1
(n = 6) ≥ 10 1352 8 168 1183 213 5 1

a Variant is within 2-bp of a splicing junction.

b Variant overlaps a transcript without coding annotation in the gene definition.

Guo et al.

Guo et al. BMC Genomics 2012 13:194   doi:10.1186/1471-2164-13-194

Open Data