Table 1

Distribution of reads aligned to the human reference genome: average (standard deviation) in millions, and percentage
Overall Inside TR Outside ≤ 200 bp Outside >200 bp
SureSelect (n = 22) # Reads # Reads % # Reads % # Reads %
 Before filter 63.4 (9.6) 34.3 (4.9) 54.1 6.4 (1.2) 10.1 22.7 (3.9) 35.8
 After filter 57.2 (8.6) 32.0 (4.5) 56.1 6.0 (1.1) 10.4 19.2 (3.3) 33.5
TrueSeq (n = 6)
 Before filter 86.2 (2.5) 37.0 (0.7) 42.9 17.1 (0.3) 19.8 32.1 (1.3) 37.2
 After filter 75.1 (2.1) 34.8 (0.7) 46.3 16.3 (0.3) 21.7 24.0 (1.1) 32.0
1000 G (n = 6)
 Before filter 33.9 (8.1) 7.6 (1.2) 22.3 4.7 (1.7) 14.0 21.6 (8.4) 63.7
 After filter 25.6 (3.8) 7.3 (1.1) 28.7 4.7 (1.7) 18.6 13.6 (3.6) 52.7

The filter was MAPQ ≥ 20.

Guo et al.

Guo et al. BMC Genomics 2012 13:194   doi:10.1186/1471-2164-13-194

Open Data