Table 5

Expression analysis of libraries showing isotigs where reads from each experimental condition significantly contributed to the assembly
Condition Isotig number Gene description Orthologue accession number e-value p-value FDR p-value
Fasted 21°C Isotig06049 Slow myosin heavy chain 2 CBN81811.1 0.0 0 0
Isotig05152 Similar to ankyrin 2 CAM15089.1 2e-24 0 0
Isotig01065 Calcium binding and coiled coil domain AAI17592.1 1e-57 0 0
Isotig30481 myotubularin-related protein 5 NP_001038623 3e-11 0 0
Contig01939 GTPase, IMAP family member 7 ACO08772.1 2e-53 0 0
Isotig31931 Myosin, heavy polypeptide 6 CAX12653.1 2e-06 0 0
Isotig06490 Jeltraxin ACN11240.1 6e-14 1,00e-05 0.004
Isotig30481 Adenylate kinase 1-2 ACM41863.1 5e-33 0 0
Isotig07982 Aurora kinase A-interactinng protein ACQ58398 4e-92 0 0
Isotig06835 Slow Troponin T2 AAV80376.1 1e-68 0 0
Fed 21°C Contig02082 Parvalbumin ACM41857.1 0.72 0 0
Isotig05339 VHSV-induced protein AEG78384 1e-15 1,00E-05 0.004
Isotig17563 Putative nuclease HARBI1 XP_003200346.1 1e-16 0 0
Isotig18811 Notch 2 BAA20535.1 9e-61 0 0
Isotig22470 Phosphatidylinositol N-acetylglucosaminyltransferase NP_955461.1 7e-15 0 0
Isotig20332 Glyceraldehyde 3-dehydrogenase XP_9741181.1 5e-14 0 0
Contig01939 GTPase, IMAP family member 7 ACO08772.1 2e-53 0 0
Isotig07008 Ribosomal protein L28 ACQ58416.1 5e-59 2,00E-05 0.009
Isotig38944 AMP deaminase-1-like XP_003212994.1 3e-04 0 0
Isotig28974 Myosin light chain 2 AAX34414.1 2e-10 8,00E-05 0.03
33°C Isotig05428 Xin actin-binding repeat containing protein 1 NP_001012377.1 0.0 0 0
Isotig02673 Clusterin-1 NP_001117890.1 3e-139 0 0
Isotig02981 Myosin-6-like isoform 1 XP_001923213.1 0.0 0 0
Isotig08301 Heat shock protein 30 NP_001134440.1 6e-62 0 0
Isotig05469 Activator of 90kda heat shock protein ATPase homolog 1 NP_997767.1 2e-145 5,00E-05 0.02
Isotig01745 Selenoprotein L NP_001180385.1 3e-63 8.00E-05 0.03
Isotig07184 eEF1A2 binding protein NP_001133224.1 1e-104 0 0
Isotig03041 Heat shock protein 4a NP_999881.1 0.0 5,00E-05 0.02
Isotig18085 Srfs18 CAG06353.1 1e-45 1,00E-05 0.004
Isotig02073 Heat shock protein 90 AAQ95586.1 0.0 0 0
11°C Isotig05303 Zinc binding protein 33A XP_694642.3 5e-61 0 0
Isotig01520 Interferon stimulated gene 15 BAJ16365.1 4e-46 0 0
Isotig03692 Receptor transporting protein 3 ACQ57966.1 6e-66 0 0
Isotig03214 Nicotinic acetylcholine receptor alpha 1b CAG09972.1 0.0 0 0
Isotig05152 Similar to ankyrin 2 CAM15089.1 2e-24 0 0
Isotig06087 G-rich sequence factor 1 NP_001135339.1 1e-107 0 0
Isotig07416 Presenilin associated ABG81447.1 6e-45 1,00E-05 0.004
Isotig05735 Ubtf protein AAI15119.1 5e-169 0 0
Isotig19061 rRNA promoter binding protein NP_671477 7e-10 0 0
Isotig06639 C6orf64 ACO14504.1 2e-26 0 0

Gene description, orthologue accession number and e-values were obtained by blastx against the NCBI nr database. Both p-values and FDR p-value were calculated by chi-square and FDR statistic using R statistical package [70].

Garcia de la serrana et al.

Garcia de la serrana et al. BMC Genomics 2012 13:181   doi:10.1186/1471-2164-13-181

Open Data