Table 3 |
|
| Target genes of miRNAs predicted by TargetScan and miRanda algorithms | |
| miRNA | overlapping genes |
| miR-1 | KRAB domain-containing zinc finger protein |
| miR-12 | acyl-CoA binding domain containing 7 |
| miR-133 | ubiquitin-conjugating enzyme E2 A |
| miR-13a | O-methyltransferase; fibroinase; Mn superoxide dismutase; DNA-binding nuclear protein p8; peroxin-11 C |
| miR-2001 | Scavenger receptor class B; glycoprotein 25 l; vp28 (WSSV) |
| miR-263a | Dihydropteridine reductase; Tetraspanins-like protein |
| miR-275 | Peritrophin A; calcium and integrin binding protein CIB |
| miR-276b | Vacuolar ATP synthase |
| miR-278 | eukaryotic translation initiation factor 3 subunit |
| miR-279 | ubiquitin protein ligase; Exoskeletal protein |
| miR-281 | eukaryotic translation elongation factor 1 alpha (eEF-1a); elongation factor EF-1 alpha subunit |
| miR-282 | ribose 5-phosphate isomerase A; small subunit ribosomal protein S6e |
| miR-2a | Melanization interacting protein; Fortilin binding protein 1; O-methyltransferase |
| miR-317 | hfb2 protein; (R)-3-amino-2-methylpropionate-pyruvate transaminase; Eukaryotic initiation factor 1A; maleylacetoacetate isomerase; hfb2 protein |
| miR-34 | solute carrier family 37 (glycerol-3-phosphate transporter), member 2; Rpl6, NV12167; ribosomal protein L6; K02934 large subunit ribosomal protein L6e; ubiquitin protein ligase; K10573 ubiquitin-conjugating enzyme E2 A; Nuclear autoantigenic sperm protein; similar to elongase, putative; E3 ubiquitin ligase |
| miR-7 | eukaryotic translation initiation factor 4A2; translation initiation factor eIF-4A; wsv477 (WSSV) |
| miR-71 | actin 1; microsomal signal peptidase; signal peptidase complex subunit 3 |
| miR-8* | hfb2 protein |
| miR-87 | alanine-glyoxylate transaminase |
| miR-92a | Eukaryotic initiation factor 1A; maleylacetoacetate isomerase |
| miR-let7 | rab11; T-complex protein 1 subunit gamma |
| miR-S1 | Astacin |
| miR-S10 | Rnps1 protein; RNA-binding protein with serine-rich domain 1; nuclear distribution protein NUDC; isopentenyl-diphosphate delta isomerase 1 |
| miR-S12 | ribosomal protein L5; Glucosyl/glucuronosyl transferase (Fragment); myosin heavy chain; Cationic trypsin-3 precursor Pretrypsinogen III; trypsin; eukaryotic translation initiation factor 2B; ribosomal protein L13A; microsomal glutathione S-transferase; glutathione S-transferase; methionyl aminopeptidase |
| miR-S13 | similar to ribosomal protein L28; K02903 large subunit ribosomal protein L28e |
| miR-S14 | putative beta-NAC-like protein; phosphatidylserine receptor |
| miR-S3 | acireductone dioxygenase; ubiquitin C-terminal hydrolase; Duplex-specific nuclease |
| miR-S5 | phosphatidylserine receptor; cystatin B |
| miR-S6 | Glucosyl/glucuronosyl transferase |
| miR-S9 | 3-hydroxyisobutyryl-CoA hydrolase |
Huang et al. BMC Genomics 2012 13:159 doi:10.1186/1471-2164-13-159
