Table 2

Expression patterns of up-regulated or down-regulated shrimp miRNAs after WSSV infection
MiRNA name Counts of 0 hpi Ratio of counts to 0 hpi at
6 hpi 24 hpi 48 hpi
up-regulation with ≥2 fold up-regulation with ≥2 fold
miR-1 1292519 1.53 1.21 2.74
miR-2a 97 2.85 2.42 3.62
miR-2b 37 0.86 0.7 5.1
miR-2c 15 0.56 0.73 23.46
miR-7 6 15.16 16 14.16
miR-34 9 174.55 120.11 18.77
miR-71 590 2.85 2.19 9.03
miR-87 229 5.23 2.32 2.96
miR-100 5550 0.8 0.69 20.89
miR-133 27 46.89 44.52 16.63
miR-184 1082 8.16 6.4 4.51
miR-190 389 3.67 2.79 6.69
miR-193 3 24.6 13.3 42.6
miR-252 7 36.29 34.14 8.14
miR-263a 23 25.61 19.74 6.7
miR-275 364 18.74 10.28 87.04
miR-315 151 2.15 1.54 12.16
miR-317 121 3.79 2.63 9.02
miR-965 39 1.58 1.79 2.46
miR-993 69 7.19 4.1 16.07
miR-let7 6075 46.76 40.88 18.64
miR-281-2* 1885 4.1 13.26 6.38
miR-8* 787 6.42 3.82 13
miR-276a* 459 1.46 1.09 14.15
miR-S2 6 1.16 37 0.83
Down-regulation with ≥2 fold Down-regulation with ≥2 fold
miR-33 631 0.04 0.03 1.29
miR-79 895 0.04 0.03 0.19
miR-9 6175 0.05 0.05 0.15
miR-279 2752 0.71 0.85 0.24
miR-S5 1063 0 0.06 0
miR-S12 376 0 0.67 0.03

Array data for 31 host miRNAs with high-quality data (total counts ≥200) at different time points after WSSV infection. hpi, hours post infection.

Huang et al.

Huang et al. BMC Genomics 2012 13:159   doi:10.1186/1471-2164-13-159

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