Additional file 6.

Figure S5. LincRNA downstream of Sox2. Plot showing novel putative enhancers downstream of the Sox2 gene. The Enh and PrL probabilities of 1kb bins are shown in red and blue bars, respectively. Only bins with probabilities greater than 0.8 are displayed for higher stringency, and the y-axis scale is from 0.5 to 1. A lincRNA approximately 100kb downstream of Sox2 near a distal enhancer cluster is shown. Transcription factors peaks identified using the SISSRs algorithm are illustrated in rectangle boxes to demonstrate overlaps of the enhancers with TFs. The coverage plot for RNA-Seq data in ES cells is shown at the bottom.

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Chen et al. BMC Genomics 2012 13:152   doi:10.1186/1471-2164-13-152