Additional file 5.

Figure S4. Four known mouse ES cells enhancers that interact with nearby promoters through looping mechanisms. Plot showing previously validated enhancers around Pou5f1 (Oct4), Nanog, Phc1, and Lefty1. The Enh and PrL probabilities of 1kb bins are shown in red and blue bars, respectively. Only probabilities greater than 0.8 are shown for higher stringency (n=1277 for Enh; n=21581 for PrL), and the y-axis scale is from 0.5 to 1. Transcription factors peaks identified using the SISSRs algorithm are illustrated in rectangle boxes to demonstrate overlaps of the enhancers with TFs.

Format: PDF Size: 244KB Download file

This file can be viewed with: Adobe Acrobat Reader

Chen et al. BMC Genomics 2012 13:152   doi:10.1186/1471-2164-13-152